API reference for Run() class

class autoclasswrapper.Run(root_name='autoclass', tolerate_error=False)

Autoclass running script.

Parameters

  • root_name (string, optional (default: "autoclass")) – Root name for input files and running script. Example: “autoclass” will lead to “autoclass.db2”, “autoclass.model”, “autoclass.sh”…

  • tolerate_error (bool, optional (default: False)) – If True, countinue generation of autoclass input files even if an error is encounter. If False, stop at first error.

had_error

Set to True if an error has been found in the generation of autoclass input files.

Type

bool (defaut False)

create_run_file(*args, **kwargs)

Create bash script that runs AutoClass C.

create_run_file_test(*args, **kwargs)

Create dummy script.

Scrit will wait for xx seconds while touching .log file every second.

Parameters

time (int (default: 60), optional) – Time in seconds to wait.

handle_error()

Handle error during data parsing and formating.

Function decorator.

Parameters

f (function) –

Returns

try_function

Return type

function wrapped into error handler

run(*args, **kwargs)

Run AutoClass C classification.

autoclass-c executable must be in PATH!

Parameters

tag (string (default: ""), optional) – Tag to identify the autoclass run among other processes